branch_singles

Single nodes are those with exactly one daughter. 
This function is required by adj_matrix_to_tree, 
since valid "phylo" objects cannot contain single nodes. 
If pre-existing branches lack lengths then these are set to 1.

Create plots that combine a phylogeny and frequency dynamics.
Phylogenetic input can be a generic adjacency matrix or a tree of class "phylo".
Inspired by similar plots in publications of the labs of RE Lenski and JE
Barrick. Named for HJ Muller (who popularised such plots) and H Wickham (whose
code this package exploits).

Robert Noble

ggmuller

Create Muller Plots of Evolutionary Dynamics

branch_singles function

<dl><dt>edges</dt>
<dd>Dataframe comprising an adjacency matrix, with column names "Parent" and "Identity"</dd></dl>

Arguments

Rob Noble, <a href="/link/robjohnnoble%40gmail.com?package=ggmuller&version=0.5.6" data-mini-rdoc="ggmuller::robjohnnoble@gmail.com">robjohnnoble@gmail.com</a>

Author

Add branches of length zero to get rid of single nodes in an adjacency matrix — branch_singles

<dl>

<dt>edges</dt>
<dd>Dataframe comprising an adjacency matrix, with column names "Parent" and "Identity"</dd>

</dl>

Rob Noble, <a href='mailto:robjohnnoble@gmail.com'>robjohnnoble@gmail.com</a>

branch_singles: Add branches of length zero to get rid of single nodes in an adjacency matrix

Description

Usage

Value

Arguments

Author

Examples