as.character.phylo

phylo

integer, the number of digits to output
  when formatting branch lengths

digits

boolean, whether or not to ignore tags
  when creating the Newick / NHX string. When FALSE, tags
  will be included in the string as NHX annotations.

ignore.tags


  Turns a phylo object into a Newick format string
  representation, including NHX annotations if the tree
  contains any tags.


ggphylo is a set of functions for producing expressive
visualizations of phylogenetic data using ggplot. Its main features
include plotting a tree alongside its alignment and using tree
annotations to modulate visual elements of the plot (e.g. line width,
node size). Various convenience methods are also included for working
more easily with ape's phylo objects.

as.character.phylo: Turns a phylo object into a Newick format string representation, including NHX annotations if the tree contains any tags.

Description

Usage

Arguments

Value