sort.df.by.tree

a data frame containing one row for each
  node in the tree. This data frame MUST contain a column
  labeled 'node', which contains, for each row, the index
  of the corresponding node in the tree.

tree.df,

phylo,


  Sorts a data frame according to a tree. Requires the data
  frame to have a 'node' column, which corresponds to the
  index of each node in the tree. Not much error-checking
  is done here, so be careful! Uses
  <code><a rd-options="" href="/link/order.nodes.visually?package=ggphylo&version=0.1" data-mini-rdoc="ggphylo::order.nodes.visually">order.nodes.visually</a></code> to sort nodes.


ggphylo is a set of functions for producing expressive
visualizations of phylogenetic data using ggplot. Its main features
include plotting a tree alongside its alignment and using tree
annotations to modulate visual elements of the plot (e.g. line width,
node size). Various convenience methods are also included for working
more easily with ape's phylo objects.

Gregory Jordan

ggphylo

Tools for laying out and plotting phylogenetic data
(trees and alignments) with ggplot.

sort.df.by.tree function


  Sorts a data frame according to a tree. Requires the data
  frame to have a 'node' column, which corresponds to the
  index of each node in the tree. Not much error-checking
  is done here, so be careful! Uses
  <code><a rd-options='' href='order.nodes.visually'>order.nodes.visually</a></code> to sort nodes.


Sorts a data frame according to a tree. Requires the data frame to
have a 'node' column, which corresponds to the index of each node in the tree. Not much error-checking is done here,
so be careful! Uses <code><a rd-options='' href='order.nodes.visually'>order.nodes.visually</a></code> to sort nodes.

Sorts a data frame according to a tree. Requires the data frame to
have a 'node' column, which corresponds to the index of each node in the tree. Not much error-checking is done here,
so be careful! Uses <code><a rd-options="" href="/link/order.nodes.visually?package=ggphylo&version=0.1" data-mini-rdoc="ggphylo::order.nodes.visually">order.nodes.visually</a></code> to sort nodes.

sort.df.by.tree: Sorts a data frame according to a tree. Requires the data frame to have a 'node' column, which corresponds to the index of each node in the tree. Not much error-checking is done here, so be careful! Uses `order.nodes.visually` to sort nodes.

Description

Usage

Arguments

Value