tags.into.df

phylo,

data.frame with a 'node' column corresponding
  to integer indices of tree nodes.


  This function is similar to the tree.as.data.frame
  method, but not exactly the same. It is used internally
  by the tree.layout function.


ggphylo is a set of functions for producing expressive
visualizations of phylogenetic data using ggplot. Its main features
include plotting a tree alongside its alignment and using tree
annotations to modulate visual elements of the plot (e.g. line width,
node size). Various convenience methods are also included for working
more easily with ape's phylo objects.

Gregory Jordan

ggphylo

Tools for laying out and plotting phylogenetic data
(trees and alignments) with ggplot.

tags.into.df function

Given a <code><a rd-options='' href='phylo'>phylo</a></code> object and a data frame, transform all
the tags from the tree ' into columns of the data frame. Rows of the
data frame are linked to the tree via a required 'node' column, which
must contain integer indices of the associated node.

Given a <code><a rd-options="" href="/link/phylo?package=ggphylo&version=0.1" data-mini-rdoc="ggphylo::phylo">phylo</a></code> object and a data frame, transform all
the tags from the tree ' into columns of the data frame. Rows of the
data frame are linked to the tree via a required 'node' column, which
must contain integer indices of the associated node.

tags.into.df: Given a `phylo` object and a data frame, transform all the tags from the tree ' into columns of the data frame. Rows of the data frame are linked to the tree via a required 'node' column, which must contain integer indices of the associated node.

Description

Usage

Arguments

Value