daa_results_df

This dataset is the result of processing 'kegg_abundance' through the 'LinDA' method in the 'pathway_daa' function.
It includes information about the feature, groups compared, p values, and method used.

datasets

Provides a convenient way to analyze and visualize 'PICRUSt2' output with pre-defined plots and functions. Allows for generating statistical plots about microbiome functional predictions and offers customization options. Features a one-click option for creating publication-level plots, saving time and effort in producing professional-grade figures. Streamlines the 'PICRUSt2' analysis and visualization process. For more details, see Yang et al. (2023) <doi:10.1093/bioinformatics/btad470>.

Chen Yang

ggpicrust2

Make 'PICRUSt2' Output Analysis and Visualization Easier

daa_results_df function

A data frame with columns:<dl>
 <dt>adj_method</dt>
<dd>Method used for p-value adjustment.</dd> <dt>feature</dt>
<dd>The feature (pathway) being compared.</dd> <dt>group1</dt>
<dd>The first group in the comparison.</dd> <dt>group2</dt>
<dd>The second group in the comparison.</dd> <dt>method</dt>
<dd>The method used for the comparison.</dd> <dt>p_adjust</dt>
<dd>The adjusted p-value from the comparison.</dd> <dt>p_values</dt>
<dd>The raw p-value from the comparison.</dd>
</dl>

Format

DAA Results Dataset — daa_results_df

A data frame with columns:<dl>
 <dt>adj_method</dt>
<dd>Method used for p-value adjustment.</dd>

 <dt>feature</dt>
<dd>The feature (pathway) being compared.</dd>

 <dt>group1</dt>
<dd>The first group in the comparison.</dd>

 <dt>group2</dt>
<dd>The second group in the comparison.</dd>

 <dt>method</dt>
<dd>The method used for the comparison.</dd>

 <dt>p_adjust</dt>
<dd>The adjusted p-value from the comparison.</dd>

 <dt>p_values</dt>
<dd>The raw p-value from the comparison.</dd>


</dl>

daa_results_df: DAA Results Dataset

Description

Usage

Arguments

Format

References