calculate_rank_metric

internal

Provides a convenient way to analyze and visualize 'PICRUSt2' output with pre-defined plots and functions. Allows for generating statistical plots about microbiome functional predictions and offers customization options. Features a one-click option for creating publication-level plots, saving time and effort in producing professional-grade figures. Streamlines the 'PICRUSt2' analysis and visualization process. For more details, see Yang et al. (2023) <doi:10.1093/bioinformatics/btad470>.

Chen Yang

ggpicrust2

Make 'PICRUSt2' Output Analysis and Visualization Easier

calculate_rank_metric function

<dl><dt>abundance</dt>
<dd>A matrix of abundance data</dd>
<dt>metadata</dt>
<dd>A data frame of metadata</dd>
<dt>group</dt>
<dd>A character string specifying the grouping variable</dd>
<dt>method</dt>
<dd>A character string specifying the ranking method</dd></dl>

Arguments

Calculate rank metric for GSEA — calculate_rank_metric

<dl>

<dt>abundance</dt>
<dd>A matrix of abundance data</dd>


<dt>metadata</dt>
<dd>A data frame of metadata</dd>


<dt>group</dt>
<dd>A character string specifying the grouping variable</dd>


<dt>method</dt>
<dd>A character string specifying the ranking method</dd>

</dl>

calculate_rank_metric: Calculate rank metric for GSEA

Description

Usage

Value

Arguments