volcano_example.df

A dataset containing reshaped and simplified output from an
 analysis of data from RNAseq done with package edgeR. Original data from
 gene expression in the plant species Arabidopsis thaliana.

datasets

Extensions to 'ggplot2' respecting the grammar of graphics
paradigm. Specialization of method ggplot(): accept and convert on the fly
time series data. Geom: "table", "plot" and "grob" add insets to plots
using native data coordinates, while "table_npc", "plot_npc" and "grob_npc"
do the same using "npc" coordinates through new aesthetics "npcx" and "npcy".
Statistics: locate and tag peaks and valleys; count observations in different
quadrants of a plot; select observations based on 2D density; label with the
equation of a polynomial fitted with lm() or other types of models; labels
with P-value, R^2 or adjusted R^2 or information criteria for fitted models;
label with ANOVA table for fitted models; label with summary for fitted
models. Model fit classes for which suitable methods are provided by package
'broom' are supported. Scales and stats to build volcano and quadrant plots
based on outcomes, fold changes, p-values and false discovery rates.

Pedro Aphalo

ggpmisc

Miscellaneous Extensions to 'ggplot2'

Pedro J. Aphalo

Kamil Slowikowski

volcano_example.df function

A <code>data.frame</code> object with 1218 rows and 5 variables

volcano_example.df: Example gene expression data

Description

Usage

Arguments

Format

See Also

Examples