volcano_example.df

A dataset containing reshaped and simplified output from an
 analysis of data from RNAseq done with package edgeR. Original data from
 gene expression in the plant species Arabidopsis thaliana.

datasets

Extensions to 'ggplot2' respecting the grammar of graphics
paradigm. Statistics: locate and tag peaks and valleys; label plot with the
equation of a fitted polynomial or other types of models; labels
with P-value, R^2 or adjusted R^2 or information criteria for fitted models;
label with ANOVA table for fitted models; label with summary for fitted
models. Model fit classes for which suitable methods are provided by package
'broom' and 'broom.mixed' are supported. Scales and stats to build volcano
and quadrant plots based on outcomes, fold changes, p-values and false
discovery rates.

Pedro Aphalo

ggpmisc

Miscellaneous Extensions to 'ggplot2'

Pedro J. Aphalo

Kamil Slowikowski

Samer Mouksassi

volcano_example.df function

A <code>data.frame</code> object with 1218 rows and 5 variables

Format

Example gene expression data — volcano_example.df

Example gene expression data

volcano_example.df: Example gene expression data

Description

Usage

Arguments

Format

See Also

Examples