ggrasp.addRanks

the GGRaSP object for which the ranks will be added.

string pointing to a file containing the ranks

rank.file

adds a rank file to a GGRaSP object. If clusters have been defined, the medoids will be re-defined

Given a group of genomes and their relationship with each other, the package clusters the genomes and selects the most representative members of each cluster. Additional data can be provided to the prioritize certain genomes. The results can be printed out as a list or a new phylogeny with graphs of the trees and distance distributions also available. For detailed introduction see: Thomas H Clarke, Lauren M Brinkac, Granger Sutton, and Derrick E Fouts (2018), GGRaSP: a R-package for selecting representative genomes using Gaussian mixture models, Bioinformatics, bty300, <doi:10.1093/bioinformatics/bty300>.

ggrasp.addRanks: ggrasp.addRanks

Description

Usage

Arguments

Value