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ggseqlogo (version 0.2)

A 'ggplot2' Extension for Drawing Publication-Ready Sequence Logos

Description

The extensive range of functions provided by this package makes it possible to draw highly versatile sequence logos. Features include, but not limited to, modifying colour schemes and fonts used to draw the logo, generating multiple logo plots, and aiding the visualisation with annotations. Sequence logos can easily be combined with other plots 'ggplot2' plots.

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Install

install.packages('ggseqlogo')

Monthly Downloads

3,302

Version

0.2

License

LGPL

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Repository

https://github.com/omarwagih/ggseqlogo

Maintainer

Omar Wagih

Last Published

February 9th, 2024

Functions in ggseqlogo (0.2)

Quick sequence logo plot

Plots sequence logo as a layer on ggplot

make_col_scheme

Create new sequence logo color scheme

List of aligned kinase-substrate binding sequences

List of position frequency matrices for transcription factors

List fonts available in ggseqlogo

list_col_schemes

List color schemes available in ggseqlogo

ggseqlogo custom theme

List of aligned transcription factor binding sequences