ggspectra (version 0.3.1)

Afr_plot: Plot a filter spectrum.

Description

This function returns a ggplot object with an annotated plot of a source_spct object showing absorptance.

Usage

Afr_plot(spct, w.band, range, pc.out, label.qty, span, annotations,
  text.size, idfactor, ylim, na.rm, ...)

Arguments

spct

a filter_spct object.

w.band

list of waveband objects.

range

an R object on which range() returns a vector of length 2, with min annd max wavelengths (nm).

pc.out

logical, if TRUE use percents instead of fraction of one.

label.qty

character string giving the type of summary quantity to use for labels.

span

a peak is defined as an element in a sequence which is greater than all other elements within a window of width span centered at that element.

annotations

a character vector.

text.size

numeric size of text in the plot decorations.

idfactor

character Name of an index column in data holding a factor with each spectrum in a long-form multispectrum object corresponding to a distinct spectrum. If idfactor=NULL the name of the factor is retrieved from metadata or if no metadata found, the default "spct.idx" is tried. If idfactor=NA no aesthetic is mapped to the spectra and the user needs to use 'ggplot2' functions to manually map an aesthetic or use facets for the spectra.

ylim

numeric y axis limits,

na.rm

logical.

...

currently ignored.

Value

a ggplot object.