ggstatsplot (version 0.0.8)

ggpiestats: Pie charts with statistical tests

Description

Pie charts for categorical data with statistical details included in the plot as a subtitle.

Usage

ggpiestats(data, main, condition = NULL, counts = NULL, ratio = NULL,
  paired = FALSE, factor.levels = NULL, stat.title = NULL,
  sample.size.label = TRUE, bf.message = FALSE,
  sampling.plan = "indepMulti", fixed.margin = "rows",
  prior.concentration = 1, title = NULL, caption = NULL,
  conf.level = 0.95, nboot = 25, simulate.p.value = FALSE,
  B = 2000, legend.title = NULL, facet.wrap.name = NULL, k = 2,
  perc.k = 0, slice.label = "percentage", facet.proptest = TRUE,
  ggtheme = ggplot2::theme_bw(), ggstatsplot.layer = TRUE,
  package = "RColorBrewer", palette = "Dark2", direction = 1,
  messages = TRUE)

Arguments

data

The data as a data frame (matrix or tables will not be accepted).

main

The variable to use as the rows in the contingency table.

condition

The variable to use as the columns in the contingency table.

counts

A string naming a variable in data containing counts, or NULL if each row represents a single observation (Default).

ratio

A vector of numbers: the expected proportions for the proportion test. Default is NULL, which means if there are two levels ratio = c(1,1), etc.

paired

Logical indicating whether data came from a within-subjects design study (Default: FALSE). If TRUE, McNemar test subtitle will be returned. If FALSE, Pearson's chi-square test will be returned.

factor.levels

A character vector with labels for factor levels of main variable.

stat.title

Title for the effect being investigated with the chi-square test. The default is NULL, i.e. no title will be added to describe the effect being shown. An example of a stat.title argument will be something like "main x condition" or "interaction".

sample.size.label

Logical that decides whether sample size information should be displayed for each level of the grouping variable condition (Default: TRUE).

bf.message

Logical that decides whether to display a caption with results from bayes factor test in favor of the null hypothesis (default: FALSE).

sampling.plan

Character describing the sampling plan. Possible options are "indepMulti" (independent multinomial; default), "poisson", "jointMulti" (joint multinomial), "hypergeom" (hypergeometric). For more, see ?BayesFactor::contingencyTableBF().

fixed.margin

For the independent multinomial sampling plan, which margin is fixed ("rows" or "cols"). Defaults to "rows".

prior.concentration

Specifies the prior concentration parameter, set to 1 by default. It indexes the expected deviation from the null hypothesis under the alternative, and corresponds to Gunel and Dickey's (1974) "a" parameter.

title

The text for the plot title.

caption

The text for the plot caption.

conf.level

Scalar between 0 and 1. If unspecified, the defaults return 95% lower and upper confidence intervals (0.95).

nboot

Number of bootstrap samples for computing effect size (Default: 25).

simulate.p.value

a logical indicating whether to compute p-values by Monte Carlo simulation.

B

an integer specifying the number of replicates used in the Monte Carlo test.

legend.title

Title text for the legend.

facet.wrap.name

The text for the facet_wrap variable label.

k

Number of digits after decimal point (should be an integer) (Default: k = 2).

perc.k

Numeric that decides number of decimal places for percentage labels (Default: 0).

slice.label

Character decides what information needs to be displayed on the label in each pie slice. Possible options are "percentage" (default), "counts", "both".

facet.proptest

Decides whether proportion test for main variable is to be carried out for each level of condition (Default: TRUE).

ggtheme

A function, ggplot2 theme name. Default value is ggplot2::theme_bw(). Any of the ggplot2 themes, or themes from extension packages are allowed (e.g., ggthemes::theme_economist(), hrbrthemes::theme_ipsum_ps(), ggthemes::theme_fivethirtyeight(), etc.).

ggstatsplot.layer

Logical that decides whether theme_ggstatsplot theme elements are to be displayed along with the selected ggtheme (Default: TRUE).

package

Name of package from which the palette is desired as string or symbol.

palette

If a character string (e.g., "Set1"), will use that named palette. If a number, will index into the list of palettes of appropriate type. Default palette is "Dark2".

direction

Either 1 or -1. If -1 the palette will be reversed.

messages

Decides whether messages references, notes, and warnings are to be displayed (Default: TRUE).

Value

Unlike a number of statistical softwares, ggstatsplot doesn't provide the option for Yates' correction for the Pearson's chi-squared statistic. This is due to compelling amount of Monte-Carlo simulation research which suggests that the Yates' correction is overly conservative, even in small sample sizes. As such it is recommended that it should not ever be applied in practice (Camilli & Hopkins, 1978, 1979; Feinberg, 1980; Larntz, 1978; Thompson, 1988). For more, see- http://www.how2stats.net/2011/09/yates-correction.html

References

https://indrajeetpatil.github.io/ggstatsplot/articles/web_only/ggpiestats.html

Examples

Run this code
# NOT RUN {
# for reproducibility
set.seed(123)

# simple function call with the defaults (without condition)
ggstatsplot::ggpiestats(
  data = ggplot2::msleep,
  main = vore,
  perc.k = 1,
  k = 2
)

# simple function call with the defaults (with condition)
ggstatsplot::ggpiestats(
  data = datasets::mtcars,
  main = vs,
  condition = cyl,
  bf.message = TRUE,
  nboot = 10,
  factor.levels = c("0 = V-shaped", "1 = straight"),
  legend.title = "Engine"
)

# simple function call with the defaults (without condition; with count data)
library(jmv)

ggstatsplot::ggpiestats(
  data = as.data.frame(HairEyeColor),
  main = Eye,
  counts = Freq
)
# }

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