layout_fishbone

Calculates node coordinates for a glycan structure to mimic SNFG style.
Supports customizable direction and branch length.

Extends the 'ggplot2' plotting system to support network visualization. Inspired by the 'Method 1' in 'ggtree' (G Yu (2018) <doi:10.1093/molbev/msy194>), 'ggtangle' is designed to work with network associated data.

Guangchuang Yu

ggtangle

Draw Network with Data

layout_fishbone function

<dl><dt>graph</dt>
<dd>An igraph object.</dd>
<dt>direction</dt>
<dd>The direction of the main chain growth ("left", "right", "up", "down"). Default is "left".</dd>
<dt>length</dt>
<dd>The distance between nodes. Default is 1.</dd>
<dt>angle_sep</dt>
<dd>The angle separation for branches in degrees. Default is 30.</dd>
<dt>...</dt>
<dd>Additional arguments.</dd></dl>

Arguments

Glycan Layout Algorithm (Fishbone/SNFG-like) — layout_fishbone

<dl>

<dt>graph</dt>
<dd>An igraph object.</dd>


<dt>direction</dt>
<dd>The direction of the main chain growth ("left", "right", "up", "down"). Default is "left".</dd>


<dt>length</dt>
<dd>The distance between nodes. Default is 1.</dd>


<dt>angle_sep</dt>
<dd>The angle separation for branches in degrees. Default is 30.</dd>


<dt>...</dt>
<dd>Additional arguments.</dd>

</dl>

layout_fishbone: Glycan Layout Algorithm (Fishbone/SNFG-like)

Description

Usage

Value

Arguments