get.fields,jplace-method

get.placements,jplace-method

get.treeinfo,jplace-method

get.treetext,jplace-method

jplace-class

show,jplace-method


Class "jplace"
This class stores information of jplace file.


classes

ggtree extends the ggplot2 plotting system which implemented the
grammar of graphics. ggtree is designed for visualizing phylogenetic tree
and different types of associated annotation data.

Guangchuang Yu

ggtree

a phylogenetic tree viewer for different types of tree annotations

jplace-class function

 <dl>
<dt><code>fields</code></dt><dd>colnames of first variable of placements</dd> <dt><code>treetext</code></dt><dd>tree text</dd> <dt><code>phylo</code></dt><dd>tree phylo object</dd> <dt><code>placements</code></dt><dd>placement information</dd> <dt><code>version</code></dt><dd>version</dd> <dt><code>metadata</code></dt><dd>metadata</dd> <dt><code>file</code></dt><dd>jplace file</dd> <dt><code>extraInfo</code></dt><dd>extra information</dd> </dl>

Slots

Class "jplace"
This class stores information of jplace file.

jplace-class: Class "jplace" This class stores information of jplace file.

Description

Arguments

Slots

See Also