ggtree (version 1.4.11)

get.tree: get.tree method

Description

get.tree method

Usage

get.tree(object, ...)
"get.tree"(object, ...)
"get.tree"(object, ...)
"get.tree"(object)
"get.tree"(object, ...)
get.tree(object, ...)
"get.tree"(object, by = "rst", ...)
"get.tree"(object)
"get.tree"(object)
"get.tree"(object, ...)
"get.tree"(object, ...)
"get.tree"(object)
"get.tree"(object, ...)
"get.tree"(object, ...)

Arguments

object

one of phylo, jplace, nhx, phangorn, beast, hyphy, codeml, codeml_mlc, paml_rst object

...

additional parameter

by

one of rst or mlc

Value

phylo object

Examples

nwk <- system.file("extdata/HYPHY", "labelledtree.tree", package="ggtree")
ancseq <- system.file("extdata/HYPHY", "ancseq.nex", package="ggtree")
hy <- read.hyphy(nwk, ancseq)
get.tree(hy)