ggtree (version 1.4.11)

groupOTU: groupOTU method

Description

group tree based on selected OTU, will traceback to MRCA

Usage

groupOTU(object, focus, group_name = "group", ...)
"groupOTU"(object, focus, group_name = "group")
"groupOTU"(object, focus, group_name = "group")
"groupOTU"(object, focus, group_name = "group")
"groupOTU"(object, focus, group_name = "group")
"groupOTU"(object, focus, group_name = "group")
"groupOTU"(object, focus, group_name = "group")
"groupOTU"(object, focus, group_name)
"groupOTU"(object, focus, group_name = "group")
"groupOTU"(object, focus, group_name = "group")
"groupOTU"(object, focus, group_name = "group")
"groupOTU"(object, focus, group_name = "group")
"groupOTU"(object, focus, group_name = "group")
"groupOTU"(object, focus, group_name = "group")
"groupOTU"(object, focus, group_name = "group")
"groupOTU"(object, focus, group_name = "group", tree = "TREE")

Arguments

object

supported objects, including phylo, paml_rst, codeml_mlc, codeml, jplace, beast, hyphy

focus

a vector of tip (label or number) or a list of tips.

group_name

name of the group, 'group' by default

...

additional parameter

tree

which tree selected

Value

group index