phangorn-class


Class "phangorn"
This class stores ancestral sequences inferred from 'phangorn'


classes

ggtree extends the ggplot2 plotting system which implemented the
grammar of graphics. ggtree is designed for visualizing phylogenetic tree
and different types of associated annotation data.

Guangchuang Yu

ggtree

an R package for visualization and annotation of phylogenetic trees with their covariates and other associated data

phangorn-class function

 <dl>
<dt><code>fields</code></dt><dd>available attributes</dd> <dt><code>phylo</code></dt><dd>phylo object</dd> <dt><code>seq_type</code></dt><dd>one of "NT" and "AA"</dd> <dt><code>tip_seq</code></dt><dd>sequences of tips</dd> <dt><code>ancseq</code></dt><dd>ancenstral sequences</dd> <dt><code>subs</code></dt><dd>sequence substitution</dd> <dt><code>AA_subs</code></dt><dd>Amino acid sequence substitution</dd> <dt><code>extraInfo</code></dt><dd>extra information</dd> </dl>

phangorn-class: Class "phangorn" This class stores ancestral sequences inferred from 'phangorn'

Description

Arguments

Slots

See Also