ggvegan (version 0.0-9)

autoplot.decorana: ggplot-based plot for objects of class "decorana"

Description

Produces a multi-layer ggplot object representing the output of objects produced by decorana.

Usage

# S3 method for decorana
autoplot(object, axes = c(1, 2), geom = c("point",
  "text"), layers = c("species", "sites"), legend.position = "right",
  title = NULL, subtitle = NULL, caption = NULL, ylab, xlab, ...)

Arguments

object

an object of class "decorana", the result of a call to decorana.

axes

numeric; which axes to plot, given as a vector of length 2.

geom

character; which geoms to use for the layers. Can be a vector of length equal to length(display), in which case the ith element of type refers to the ith element of display.

layers

character; which scores to plot as layers

legend.position

character or two-element numeric vector; where to position the legend. See theme for details. Use "none" to not draw the legend.

title

character; subtitle for the plot

subtitle

character; subtitle for the plot

caption

character; caption for the plot

ylab

character; label for the y-axis

xlab

character; label for the x-axis

...

Additional arguments passed to fortify.decorana.

Value

Returns a ggplot object.

Details

TODO

Examples

# NOT RUN {
data(dune)

sol <- decorana(dune)
autoplot(sol)
autoplot(sol, display = "species", geom = "text")
# }