ggvegan (version 0.1-0)

autoplot.prc: ggplot-based plot for objects of class "prc"

Description

Produces a multi-layer ggplot object representing the output of objects produced by prc.

Usage

# S3 method for prc
autoplot(object, select, xlab, ylab, title = NULL,
  subtitle = NULL, caption = NULL, legend.position = "top", ...)

Arguments

object

an object inheriting from class "prc", the result of a call to prc.

select

a logical vector where TRUE selects and FALSE deselects species. Alternatively a numeric vector that contains the indices selecting species. Note that these are with respect to the original species matrix, not the fortified object.

xlab

character; label for the x-axis

ylab

character; label for the y-axis

title

character; subtitle for the plot

subtitle

character; subtitle for the plot

caption

character; caption for the plot

legend.position

character; position for the legend grob. See argument legend.position in function theme.

...

Additional arguments passed to fortify.prc.

Value

Returns a ggplot object.

Details

TODO

Examples

# NOT RUN {
data(pyrifos)
week <- gl(11, 12, labels=c(-4, -1, 0.1, 1, 2, 4, 8, 12, 15, 19, 24))
dose <- factor(rep(c(0.1, 0, 0, 0.9, 0, 44, 6, 0.1, 44, 0.9, 0, 6), 11))

## Fit PRC model
mod <- prc(pyrifos, dose, week)

## plot
want <- colSums(pyrifos)
autoplot(mod, select = want)
# }