ggvegan (version 0.2.1)

autoplot.fisherfit: Plot Fisher's log-series

Description

Draws a bar plot of species rank abundance with Fisher's log-series superimposed.

Usage

# S3 method for fisherfit
autoplot(
  object,
  show.fitted = TRUE,
  xlab = "Abundance",
  ylab = "Number of Species",
  title = "Fisher's log-series distribution",
  bar.col = NA,
  bar.fill = "grey35",
  line.col = "red",
  linewidth = 0.7,
  subtitle = NULL,
  caption = NULL,
  ...
)

Value

A ggplot object.

Arguments

object

an object of class vegan::fisherfit().

show.fitted

logical; should the estimated distribution also be plotted?

xlab

character; label for the x axis.

ylab

character; label for the y axis.

title

character; subtitle for the plot.

bar.col

colour for the bar outlines. The default, NA, does not draw outlines around bars.

bar.fill

fill colour for the bars.

line.col

colour for Fisher's log-series curve.

linewidth

numeric; linewidth aesthetic for the log-series curve.

subtitle

character; subtitle for the plot.

caption

character; caption for the plot.

...

additional arguments passed to other methods.

Author

Gavin L. Simpson

Examples

library("vegan")

data(BCI)
mod <- fisherfit(BCI[5,])
autoplot(mod)