autoplot.vegan_pco

Produces a multi-layer ggplot object representing the output of
objects produced by <code>vegan::pco()</code>.

Functions to produce 'ggplot2'-based plots of objects produced by
functions in the 'vegan' package. Provides 'fortify()', 'autoplot()', and
'tidy()' methods for many of 'vegan''s functions. The aim of 'ggvegan' is to
make it easier to work within the 'tidyverse' with 'vegan'.

Gavin Simpson

ggvegan

'ggplot2' Plots for the 'vegan' Package

Gavin L. Simpson

Jari Oksanen

Didzis Elferts

autoplot.vegan_pco function

<dl><dt>object</dt>
<dd>an object of class <code>"vegan_pco"</code>, the result of a call
to <code>vegan::pco()</code>.</dd>
<dt>geom</dt>
<dd>character; which geom to use for the site (sample) scores. One
of <code>"point"</code>, or <code>"text"</code>.</dd>
<dt>legend.position</dt>
<dd>character or two-element numeric vector; where to
position the legend. See <code><a href="https://ggplot2.tidyverse.org/reference/theme.html">ggplot2::theme()</a></code> for details. Use <code>"none"</code>
to not draw the legend.</dd>
<dt>title</dt>
<dd>character; subtitle for the plot.</dd>
<dt>subtitle</dt>
<dd>character; subtitle for the plot.</dd>
<dt>caption</dt>
<dd>character; caption for the plot.</dd>
<dt>ylab</dt>
<dd>character; label for the y-axis.</dd>
<dt>xlab</dt>
<dd>character; label for the x-axis.</dd>
<dt>...</dt>
<dd>Additional arguments passed to the <code>fortify()</code> method.</dd></dl>

Arguments

Author

ggplot-based plot for objects of class "vegan_pco" — autoplot.vegan_pco

<dl>

<dt>object</dt>
<dd>an object of class <code>"vegan_pco"</code>, the result of a call
to <code>vegan::pco()</code>.</dd>


<dt>geom</dt>
<dd>character; which geom to use for the site (sample) scores. One
of <code>"point"</code>, or <code>"text"</code>.</dd>


<dt>legend.position</dt>
<dd>character or two-element numeric vector; where to
position the legend. See <code><a href='https://ggplot2.tidyverse.org/reference/theme.html'>ggplot2::theme()</a></code> for details. Use <code>"none"</code>
to not draw the legend.</dd>


<dt>title</dt>
<dd>character; subtitle for the plot.</dd>


<dt>subtitle</dt>
<dd>character; subtitle for the plot.</dd>


<dt>caption</dt>
<dd>character; caption for the plot.</dd>


<dt>ylab</dt>
<dd>character; label for the y-axis.</dd>


<dt>xlab</dt>
<dd>character; label for the x-axis.</dd>


<dt>...</dt>
<dd>Additional arguments passed to the <code>fortify()</code> method.</dd>

</dl>

autoplot.vegan_pco: ggplot-based plot for objects of class `"vegan_pco"`

Description

Usage

Value

Arguments

Author

Details

Examples