# \donttest{
## Example 1: Basic Gradient Evaluation
# Generate sample data
set.seed(123)
n <- 1000
true_params <- c(alpha = 2.5, beta = 3.5)
data <- rkw(n, alpha = true_params[1], beta = true_params[2])
# Evaluate gradient at true parameters
grad_true <- grkw(par = true_params, data = data)
cat("Gradient at true parameters:\n")
print(grad_true)
cat("Norm:", sqrt(sum(grad_true^2)), "\n")
# Evaluate at different parameter values
test_params <- rbind(
c(1.5, 2.5),
c(2.0, 3.0),
c(2.5, 3.5),
c(3.0, 4.0)
)
grad_norms <- apply(test_params, 1, function(p) {
g <- grkw(p, data)
sqrt(sum(g^2))
})
results <- data.frame(
Alpha = test_params[, 1],
Beta = test_params[, 2],
Grad_Norm = grad_norms
)
print(results, digits = 4)
## Example 2: Gradient in Optimization
# Optimization with analytical gradient
fit_with_grad <- optim(
par = c(2, 2),
fn = llkw,
gr = grkw,
data = data,
method = "BFGS",
hessian = TRUE,
control = list(trace = 0)
)
# Optimization without gradient
fit_no_grad <- optim(
par = c(2, 2),
fn = llkw,
data = data,
method = "BFGS",
hessian = TRUE,
control = list(trace = 0)
)
comparison <- data.frame(
Method = c("With Gradient", "Without Gradient"),
Alpha = c(fit_with_grad$par[1], fit_no_grad$par[1]),
Beta = c(fit_with_grad$par[2], fit_no_grad$par[2]),
NegLogLik = c(fit_with_grad$value, fit_no_grad$value),
Iterations = c(fit_with_grad$counts[1], fit_no_grad$counts[1])
)
print(comparison, digits = 4, row.names = FALSE)
## Example 3: Verifying Gradient at MLE
mle <- fit_with_grad$par
names(mle) <- c("alpha", "beta")
# At MLE, gradient should be approximately zero
gradient_at_mle <- grkw(par = mle, data = data)
cat("\nGradient at MLE:\n")
print(gradient_at_mle)
cat("Max absolute component:", max(abs(gradient_at_mle)), "\n")
cat("Gradient norm:", sqrt(sum(gradient_at_mle^2)), "\n")
## Example 4: Numerical vs Analytical Gradient
# Manual finite difference gradient
numerical_gradient <- function(f, x, data, h = 1e-7) {
grad <- numeric(length(x))
for (i in seq_along(x)) {
x_plus <- x_minus <- x
x_plus[i] <- x[i] + h
x_minus[i] <- x[i] - h
grad[i] <- (f(x_plus, data) - f(x_minus, data)) / (2 * h)
}
return(grad)
}
# Compare at several points
test_points <- rbind(
c(1.5, 2.5),
c(2.0, 3.0),
mle,
c(3.0, 4.0)
)
cat("\nNumerical vs Analytical Gradient Comparison:\n")
for (i in 1:nrow(test_points)) {
grad_analytical <- grkw(par = test_points[i, ], data = data)
grad_numerical <- numerical_gradient(llkw, test_points[i, ], data)
cat("\nPoint", i, ": alpha =", test_points[i, 1],
", beta =", test_points[i, 2], "\n")
comparison <- data.frame(
Parameter = c("alpha", "beta"),
Analytical = grad_analytical,
Numerical = grad_numerical,
Abs_Diff = abs(grad_analytical - grad_numerical),
Rel_Error = abs(grad_analytical - grad_numerical) /
(abs(grad_analytical) + 1e-10)
)
print(comparison, digits = 8)
}
## Example 5: Gradient Path Visualization
# Create grid
alpha_grid <- seq(mle[1] - 1, mle[1] + 1, length.out = 20)
beta_grid <- seq(mle[2] - 1, mle[2] + 1, length.out = 20)
alpha_grid <- alpha_grid[alpha_grid > 0]
beta_grid <- beta_grid[beta_grid > 0]
# Compute gradient vectors
grad_alpha <- matrix(NA, nrow = length(alpha_grid), ncol = length(beta_grid))
grad_beta <- matrix(NA, nrow = length(alpha_grid), ncol = length(beta_grid))
for (i in seq_along(alpha_grid)) {
for (j in seq_along(beta_grid)) {
g <- grkw(c(alpha_grid[i], beta_grid[j]), data)
grad_alpha[i, j] <- -g[1] # Negative for gradient ascent
grad_beta[i, j] <- -g[2]
}
}
# Plot gradient field
plot(mle[1], mle[2], pch = 19, col = "#8B0000", cex = 1.5,
xlim = range(alpha_grid), ylim = range(beta_grid),
xlab = expression(alpha), ylab = expression(beta),
main = "Gradient Vector Field", las = 1)
# Subsample for clearer visualization
step <- 2
for (i in seq(1, length(alpha_grid), by = step)) {
for (j in seq(1, length(beta_grid), by = step)) {
arrows(alpha_grid[i], beta_grid[j],
alpha_grid[i] + 0.05 * grad_alpha[i, j],
beta_grid[j] + 0.05 * grad_beta[i, j],
length = 0.05, col = "#2E4057", lwd = 1)
}
}
points(true_params[1], true_params[2], pch = 17, col = "#006400", cex = 1.5)
legend("topright",
legend = c("MLE", "True"),
col = c("#8B0000", "#006400"),
pch = c(19, 17), bty = "n")
grid(col = "gray90")
## Example 6: Score Test Statistic
# Score test for H0: theta = theta0
theta0 <- c(2, 3)
score_theta0 <- -grkw(par = theta0, data = data) # Score is negative gradient
# Fisher information at theta0 (using Hessian)
fisher_info <- hskw(par = theta0, data = data)
# Score test statistic
score_stat <- t(score_theta0) %*% solve(fisher_info) %*% score_theta0
p_value <- pchisq(score_stat, df = 2, lower.tail = FALSE)
cat("\nScore Test:\n")
cat("H0: alpha = 2, beta = 3\n")
cat("Score vector:", score_theta0, "\n")
cat("Test statistic:", score_stat, "\n")
cat("P-value:", format.pval(p_value, digits = 4), "\n")
# }
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