glmmSeq (version 0.0.1)

glmerApply: Fit a glmer model for an individual gene

Description

Fit a glmer model for an individual gene

Usage

glmerApply(
  geneList,
  fullFormula,
  data,
  control,
  modelData,
  designMatrix,
  offset,
  ...
)

Arguments

geneList

List with gene expression and dispersion

fullFormula

the model formula. For more information of formula structure see lme4::glmer()

data

The sample data or metadata.

control

the glmer control (default=glmerControl(optimizer="bobyqa")). For more information see lme4::glmerControl().

modelData

Expanded design matrix

designMatrix

The design matrix

offset

this can be used to specify an a priori known component to be included in the linear predictor during fitting. For more information see lme4::glmer().

...

Other parameters to pass to lme4::glmer()

Value

Returns a GlmmSeq object with results for gene-wise general linear mixed models