collapse duplicated observations
Extract variance and correlation components
list of specials -- taken from enum.R
Optimize TMB models and package results, modularly
translate vector of correlation parameters to correlation values
expand double-bar RE notation by splitting
Create X and random effect terms from formula
Get Grouping Variable
Downstream methods
List model options that glmmTMB knows about
Extract the formula of a glmmTMB object
prediction
Calculate random effect structure
Calculates number of random effects, number of parameters,
block size and number of blocks. Mostly for internal use.
Extract or Get Generalize Components from a Fitted Mixed Effects Model
Methods for extracting developer-level information from glmmTMB models
Family functions for glmmTMB
Extract info from formulas, reTrms, etc., format for TMB
Printing The Variance and Correlation Parameters of a glmmTMB
Extract fixed-effects estimates
Extract Random Effects
Check OpenMP status
Factor with numeric interpretable levels.
Objects exported from other packages
Calculate Variance-Covariance Matrix for a Fitted glmmTMB model
Reinstalling binary dependencies
Compute residuals for a glmmTMB object
Change starting parameters, either by residual method or by user input (start)
Substitute safe chars (+) for specials (for use in model.frame)
(Generalized from lme4's subbars function.)
Control parameters for glmmTMB optimization
Format the 'VarCorr' Matrix of Random Effects
use of priors in glmmTMB
Fit Models with TMB
Split formula containing special random effect terms
Simulate from covariate/metadata in the absence of a real data set (EXPERIMENTAL)
Compute likelihood profiles for a fitted model
Extract weights from a glmmTMB object
conditionally update glmmTMB object fitted with an old TMB version
Extract residual standard deviation or dispersion parameter
Simulate from a glmmTMB fitted model
Repeated counts of salamanders in streams
support methods for parametric bootstrapping
extract right-hand side of a formula
Calculate confidence intervals
Check for version mismatch in dependent binary packages
apply
Retrieve family-specific parameters
diagnose model problems
truncated distributions
Begging by Owl Nestlings
Adjust a model matrix
When not rank deficient, do nothing.
When rank deficient matrix, drop columns.
Check for identifiability of fixed effects matrices X, Xzi, Xd.
When rank_check='adjust', drop columns in X and remove associated parameters.
Seizure Counts for Epileptics - Extended