Learn R Programming
⚠️There's a newer version (1.1.11) of this package.Take me there.

glmmTMB (version 0.1.1)

Generalized Linear Mixed Models using Template Model Builder

Description

Fit linear and generalized linear mixed models with various extensions, including zero-inflation. The models are fitted using maximum likelihood estimation via 'TMB' (Template Model Builder). Random effects are assumed to be Gaussian on the scale of the linear predictor and are integrated out using the Laplace approximation. Gradients are calculated using automatic differentiation.

Copy Link

Version

Install

install.packages('glmmTMB')

Monthly Downloads

25,115

Version

0.1.1

License

AGPL-3

Maintainer

Mollie Brooks

Last Published

February 20th, 2017

Functions in glmmTMB (0.1.1)

expandAllGrpVar

expand interactions/combinations of grouping variables
getCapabilities

List model options that glmmTMB knows about
fbx

(f)ind (b)ars e(x)tended: recursive
findReTrmClasses

list of specials -- taken from enum.R
compois

Conway-Maxwell Poisson distribution parameterized by exact mean
genpois

Generalized Poisson distribution
fixef

Extract fixed-effects estimates
getME.glmmTMB

Extract or Get Generalize Components from a Fitted Mixed Effects Model
getGrpVar

Get Grouping Variable
epil2

Seizure Counts for Epileptics - Extended
getXReTrms

Create X and random effect terms from formula
print.VarCorr.glmmTMB

Printing The Variance and Correlation Parameters of a
getReStruc

Calculate random effect structure
Owls

Begging by Owl Nestlings
ranef.glmmTMB

Extract Random Effects
predict.glmmTMB

prediction
numFactor

Factor with numeric interpretable levels.
nbinom2

Family functions for glmmTMB
mkTMBStruc

Extract info from formulas, reTrms, etc., format for TMB
glmmTMB

Fit models with TMB
simulate.glmmTMB

Simulate from a glmmTMB fitted model
vcov.glmmTMB

Calculate Variance-Covariance Matrix for a Fitted glmmTMB model
VarCorr.glmmTMB

Extract variance and correlation components
residuals.glmmTMB

Compute residuals for a glmmTMB object
sigma.glmmTMB

Extract residual standard deviation or dispersion parameter
Salamanders

Repeated counts of salamanders in streams
addForm

Combine right-hand sides of an arbitrary number of formulas