Learn R Programming

globalGSA (version 1.0)

Global Gene-Set Analysis for Association Studies.

Description

Implementation of three different Gene set analysis (GSA) algorithms for combining the individual pvalues of a set of genetic variats (SNPs) in a gene level pvalue. The implementation includes the selection of the best inheritance model for each SNP.

Copy Link

Version

Install

install.packages('globalGSA')

Monthly Downloads

6

Version

1.0

License

GPL (>= 2)

Maintainer

Natalia Vilor

Last Published

October 23rd, 2013

Functions in globalGSA (1.0)

globalGSA-package

Gene-set analysis for combining p-values in a joint test of association between a phenotype and a set of genetic variants (SNPs). Previously, a global test for the best inheritance model of each SNP is performed.
globalSimes

Global Simes' combination method.
globalFisher

Global Fisher combination method.
globalARTP

Global Adaptive Rank Truncated Product method.