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gmapR (version 1.10.0)
An R interface to the GMAP/GSNAP/GSTRUCT suite
Description
GSNAP and GMAP are a pair of tools to align short-read
data written by Tom Wu. This package provides convenience
methods to work with GMAP and GSNAP from within R. In addition,
it provides methods to tally alignment results on a
per-nucleotide basis using the bam_tally tool.