Returns a GmapGenome object consisting of the
UCSC hg19 sequence centered on the region of the TP53 gene, with 1 Mb
flanking sequence on each side. This is intended as a
test/demonstration genome and can be used, e.g., in conjunction with
the LungCancerLines data package.
Usage
TP53Genome()
TP53Which()
Arguments
Value
For TP53Genome, a GmapGenome object. If this is the
first time the user has run this function, a side-effect will be the
generation of an on-disk genome index, under the name
“TP53_demo_VERSION” in the default genome directory, where
VERSION is the version of the TxDb package providing the bounds
of the P53 gene.For TP53Which, a GRanges of the extents of the TP53
gene, translated to the space of TP53Genome.