goProfiles (version 1.28.0)

compSummary: This function returns a brief summary of the comparison between two (expanded) profiles.

Description

Function to return a brief summary of the comparison between two (expanded) profiles.

Usage

compSummary(l, decs = 6)

Arguments

l

A list of comparison results as returned by a call to compareGenelists

decs

Number of decimal places to use in the output

Value

A data frame with the summarized results of each comparison. The values contained are: Sqr.Eucl.Dist: The squared euclidean distance, Standard Err: The standard error estimate, pValue p value of the test, low conf.intLower value for the desired confidence interval, up conf.intUpper value for the desired condfidence interval.

Examples

data(prostateIds)
expandedWelsh <- expandedProfile(welsh01EntrezIDs[1:100], onto="MF",
                        level=2, orgPackage="org.Hs.eg.db")
expandedSingh <- expandedProfile(singh01EntrezIDs[1:100], onto="MF",
                        level=2, orgPackage="org.Hs.eg.db")
commonGenes <- intersect(welsh01EntrezIDs[1:100], singh01EntrezIDs[1:100])
commonExpanded <- expandedProfile(commonGenes, onto="MF", level=2, orgPackage="org.Hs.eg.db")
comparedMF <-compareGOProfiles (pn=expandedWelsh, 
                          qm  = expandedSingh, 
                          pqn0= commonExpanded)
print(comparedMF)
# print(compSummary(comparedMF))