cluster_genesets

cluster significant genesets from <code>test_genesets()</code> by geneset similarity (separately for each 'geneset source')

Perform gene set enrichment analyses using the Gene set Ordinal
Association Test (GOAT) algorithm and visualize your
results. Koopmans, F. (2024) <doi:10.1038/s42003-024-06454-5>.

Frank Koopmans

goat

Gene Set Analysis Using the Gene Set Ordinal Association Test

cluster_genesets function

<dl><dt>x</dt>
<dd>results from <code>test_genesets()</code></dd>
<dt>genelist</dt>
<dd>should be the same as provided to <code>test_genesets()</code></dd>
<dt>hclust_method</dt>
<dd>hierarchical clustering method, any of; 'ward.D', 'ward.D2' (default), 'single', 'complete', 'average'</dd></dl>

Arguments

cluster significant genesets from test_genesets() by geneset similarity (separately for each 'geneset source') — cluster_genesets

<dl>

<dt>x</dt>
<dd>results from <code>test_genesets()</code></dd>


<dt>genelist</dt>
<dd>should be the same as provided to <code>test_genesets()</code></dd>


<dt>hclust_method</dt>
<dd>hierarchical clustering method, any of; 'ward.D', 'ward.D2' (default), 'single', 'complete', 'average'</dd>

</dl>

cluster_genesets: cluster significant genesets from `test_genesets()` by geneset similarity (separately for each 'geneset source')

Description

Usage

Value

Arguments