hgnc_idmap_table

download link: https://www.genenames.org/download/statistics-and-files/
table: "Complete dataset download links" --&gt;&gt; "Complete HGNC approved dataset" --&gt;&gt; download the "TXT" table
filename is typically something like hgnc_complete_set.txt
URL; https://ftp.ebi.ac.uk/pub/databases/genenames/hgnc/tsv/hgnc_complete_set.txt

Perform gene set enrichment analyses using the Gene set Ordinal
Association Test (GOAT) algorithm and visualize your
results. Koopmans, F. (2024) <doi:10.1038/s42003-024-06454-5>.

Frank Koopmans

goat

Gene Set Analysis Using the Gene Set Ordinal Association Test

hgnc_idmap_table function

<dl><dt>filename</dt>
<dd>full path to the downloaded table (expected to be tsv format, typically has .txt or .tsv file extension)</dd></dl>

Arguments

table: "Total Approved Symbols" --&gt;&gt; "TXT" / "text file in TSV format"
filename is typically something like non_alt_loci_set.txt

alternatively;

Parse HGNC gene identifier lookup table that was downloaded from genenames.org into a table with HGNC ID, symbol, synonym (NA if unavailable), entrez ID — hgnc_idmap_table

<dl>

<dt>filename</dt>
<dd>full path to the downloaded table (expected to be tsv format, typically has .txt or .tsv file extension)</dd>

</dl>

Parse HGNC gene identifier lookup table that was downloaded from genenames.org into a table with HGNC ID, symbol, synonym (NA if unavailable), entrez ID

hgnc_idmap_table: Parse HGNC gene identifier lookup table that was downloaded from genenames.org into a table with HGNC ID, symbol, synonym (NA if unavailable), entrez ID

Description

Usage

Value

Arguments

alternatively;