goat (version 1.1.2)

test_genesets_goat_fitfunction: Variant of the main GOAT function test_genesets_goat_precomputed that does not use previously prepared parameters

Description

In typical use-cases, one applies test_genesets() instead with parameter method="goat" , which in turn will use test_genesets_goat_precomputed (and not this function).

Usage

test_genesets_goat_fitfunction(
  genesets,
  genelist,
  score_type,
  niter = 5e+05,
  verbose = FALSE
)

Value

see test_genesets_goat_precomputed

Arguments

genesets

see test_genesets_goat_precomputed

genelist

see test_genesets_goat_precomputed

score_type

see test_genesets_goat_precomputed

niter

integer number of bootstrap iterations; at least 10000, at most 5000000

verbose

boolean, create debug plots

Details

Optionally, use this function to ignore precomputed/bundled null distribution estimates and perform new permutations and function fitting (e.g. because you want to test the effect of huge niter parameter, but beware of RAM requirements)