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goeveg R-package

Functions for Community Data and Ordinations

A collection of functions useful in (vegetation) community analyses and ordinations, mainly to facilitate plotting and interpretation. The ordination functions work as add-on for functions from vegan-package.

Includes:

  • Rank-abundance curves (racurve() and racurves() - functions; the latter for (multiple) samples)
  • Species response curves (specresponse() and specresponses() - functions; the latter for multiple species)
  • Automatic selection of species for ordination diagrams using limits for cover abundances and/or species fit (ordiselect() - function)
  • Stress/scree plots for NMDS (dimcheckMDS() - function)

Furthermore some basic functions are included, such as standard error of the mean sem() and coefficient of variance cv().

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Install

install.packages('goeveg')

Monthly Downloads

1,419

Version

0.2.0

License

GPL (>= 2)

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Maintainer

Friedemann Goral

Last Published

June 21st, 2016

Functions in goeveg (0.2.0)

racurves

Multiple rank-abundance curves
schedenenv

Header data for Vegetation releves from Scheden
sem

Standard error of the mean (SEM)
schedenveg

Vegetation releves from Scheden
specresponse

Species response curves
specresponses

Multiple species response curves
racurve

Rank-abundance curves
ordiselect

Species selection for ordination plots
cv

Coefficient of variation (CV)
dimcheckMDS

Stress plot/Scree plot for NMDS