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goldi (version 1.0.1)

Gene Ontology Label Discernment and Identification

Description

A tool for identifying multiple word key terms in free text with application to Gene Ontology labels.

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Version

Install

install.packages('goldi')

Monthly Downloads

10

Version

1.0.1

License

MIT + file LICENSE

Issues

3

Pull Requests

1

Stars

7

Forks

2

Maintainer

Christopher B. Cole

Last Published

June 28th, 2017

Functions in goldi (1.0.1)

replaceExpressions.PlainTextDocument

Internal expression replacement with grep
replaceExpressions

Internal expression replacement with grep
enrichment

Calculate enriched terms in a target set
goldi

Identify terms present in document.
MF_terms

Molecular Function terms A dataset of molecular function terms.
TDM.go.df

Term document matrix of Gene Ontology Molecular Function terms
replaceExpressions.character

Internal expression replacement with grep
make.syn

Construct synonym matrix for internal or external use
match

Match terms
hgt

Calculate the hypergeometric tail
make.lim

Construct Constraint Limits for Fuzzy Identification