gomms (version 1.0)

gomms:

Description

estimate factor loadings and scores.

Usage

gomms(X, n.factors = 2, min.prop.nonzeros = 0.05, show.max.delta = FALSE)

Arguments

X

raw count data.

n.factors

number of factors. Default value is 2.

min.prop.nonzeros

minimum proportion of nonzeros allowed in analysis.

show.max.delta

display the maximum different between jth and (j+1)th iterations.

Value

estimated factor scores.

References

Sohn, M.B. and Li, H. (2017). A GLM-Based Latent Variable Ordination Method for Microbiome Samples (Submitted).