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gpmap (version 0.1.2)

Analysing and Plotting Genotype-Phenotype Maps

Description

Tools for studying genotype-phenotype maps for bi-allelic loci underlying quantitative phenotypes. The 0.1 version is released in connection with the publication of Gjuvsland et al (2013) and implements basic line plots and the monotonicity measures for GP maps presented in the paper. Reference: Gjuvsland AB, Wang Y, Plahte E and Omholt SW (2013) Monotonicity is a key feature of genotype-phenotype maps. Frontier in Genetics 4:216 .

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Version

Install

install.packages('gpmap')

Monthly Downloads

208

Version

0.1.2

License

GPL-3

Maintainer

Arne B Gjuvsland

Last Published

February 16th, 2021

Functions in gpmap (0.1.2)

degree_of_monotonicity

Degree of monotonicity of GP map
enumerate_genotypes

Function for enumerating genotypes for \(N\) biallelic loci
generate_gpmap

Function for creating genotype-phenotype (GP) maps
GPmaps

Dataset containing example GP maps
monotone_regression

Perform monotone regression on a genotype-phenotype (GP) map
decompose_monotone

Decompose genotype-phenotype map(s) using monotone regression
plot.gpmap

Functions for creating lineplots of genotype-phenotype (GP) maps
gpmap-package

Tools for analysing and plotting genotype-phenotype maps
print.gpmap

Print function for gpmap objects
partial_genotype_order

Generate partial ordering of genotype space based from allele content of genotypes