get_version_info

Get version info of g:Profiler data sources

A toolset for functional enrichment analysis and visualization, gene/protein/SNP identifier conversion and mapping orthologous genes across species via 'g:Profiler' (<https://biit.cs.ut.ee/gprofiler/>).
The main tools are:
(1) 'g:GOSt' - functional enrichment analysis and visualization of gene lists;
(2) 'g:Convert' - gene/protein/transcript identifier conversion across various namespaces;
(3) 'g:Orth' - orthology search across species;
(4) 'g:SNPense' - mapping SNP rs identifiers to chromosome positions, genes and variant effects.
This package is an R interface corresponding to the 2019 update of 'g:Profiler' and provides access to 'g:Profiler' for versions 'e94_eg41_p11' and higher. See the package 'gProfileR' for accessing older versions from the 'g:Profiler' toolset.

Liis Kolberg

gprofiler2

Interface to the 'g:Profiler' Toolset

get_version_info function

<dl><dt>organism</dt>
<dd>organism name. Organism names are constructed by concatenating the first letter of the name and the family name. Example: human - 'hsapiens', mouse - 'mmusculus'.</dd></dl>

Arguments

Liis Kolberg &lt;liis.kolberg@ut.ee&gt;

Author

Get version info of g:Profiler data sources — get_version_info

<dl>

<dt>organism</dt>
<dd>organism name. Organism names are constructed by concatenating the first letter of the name and the family name. Example: human - 'hsapiens', mouse - 'mmusculus'.</dd>

</dl>

get_version_info: Get version info of g:Profiler data sources

Description

Usage

Value

Arguments

Author

Examples