Interface to the g:Profiler tool g:SNPense (https://biit.cs.ut.ee/gprofiler/snpense) that maps SNP rs identifiers to chromosome positions, genes and variant effects.
Available only for human variants.
Usage
gsnpense(query, filter_na = TRUE)
Value
The output is a data.frame which is a table closely corresponding to the
web interface output. Columns 'ensgs' and 'gene_names' can contain list of multiple values.
The result fields are further described in the vignette.
Arguments
query
vector of SNP IDs to be translated (should start with prefix 'rs').
filter_na
logical indicating whether to filter out results without a
corresponding target name.