mapViridis

Map vector of numeric values to Viridis color scale.

A toolset for functional enrichment analysis and visualization, gene/protein/SNP identifier conversion and mapping orthologous genes across species via 'g:Profiler' (<https://biit.cs.ut.ee/gprofiler/>).
The main tools are:
(1) 'g:GOSt' - functional enrichment analysis and visualization of gene lists;
(2) 'g:Convert' - gene/protein/transcript identifier conversion across various namespaces;
(3) 'g:Orth' - orthology search across species;
(4) 'g:SNPense' - mapping SNP rs identifiers to chromosome positions, genes and variant effects.
This package is an R interface corresponding to the 2019 update of 'g:Profiler' and provides access to 'g:Profiler' for versions 'e94_eg41_p11' and higher. See the package 'gProfileR' for accessing older versions from the 'g:Profiler' toolset.

Liis Kolberg

gprofiler2

Interface to the 'g:Profiler' Toolset

mapViridis function

<dl><dt>values</dt>
<dd>vector of numeric values (mostly -log10(p-values))</dd>
<dt>domain_min</dt>
<dd>numeric value that corresponds to the 'yellow' in the color scale</dd>
<dt>domain_max</dt>
<dd>numeric value that corresponds to the 'dark blue' in the color scale</dd>
<dt>n</dt>
<dd>number of bins to generate from the color scale</dd></dl>

Arguments

Liis Kolberg &lt;liis.kolberg@ut.ee&gt;

Author

Map vector of numeric values to Viridis color scale. — mapViridis

<dl>

<dt>values</dt>
<dd>vector of numeric values (mostly -log10(p-values))</dd>


<dt>domain_min</dt>
<dd>numeric value that corresponds to the 'yellow' in the color scale</dd>


<dt>domain_max</dt>
<dd>numeric value that corresponds to the 'dark blue' in the color scale</dd>


<dt>n</dt>
<dd>number of bins to generate from the color scale</dd>

</dl>

mapViridis: Map vector of numeric values to Viridis color scale.

Description

Usage

Value

Arguments

Author