gpyramid (version 0.0.1)

calcCostAll: Function to calculate the number of necessary individuals and generations as the crossing cost for all the crossing schemes. This is the wrapper function of calCost.

Description

Function to calculate the number of necessary individuals and generations as the crossing cost for all the crossing schemes. This is the wrapper function of calCost.

Usage

calcCostAll(
  line_comb_lis,
  gene_df1,
  gene_df2,
  recom_mat,
  prob_total,
  last_cross = FALSE,
  last_selfing = FALSE
)

Value

calcCostAll function returns a `gpyramid_all` object. This is a named list with the following components: * `cost_all` (`data frame`): Data frame showing the number of necessary generations (n_generation) and the number of individuals (N_total) for each crossing scheme. The crossing schemes are identified by cross_id. * Other components mirror the input parameters for downstream analysis.

Arguments

line_comb_lis

A list of combinations of parents.

gene_df1

Data frame of one set of haplotype. Values take 1 (target allele) or 0 (non-target).

gene_df2

Data frame of the other set of haplotype. Values take 1 or 0.

recom_mat

Matrix of recombination rate among genes.

prob_total

Probability of success.

last_cross

Whether or not to conduct the last cross to a cultivar without target alleles.

last_selfing

Whether or not to conduct the last selfing.