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gquad (version 2.1-2)

Prediction of G Quadruplexes and Other Non-B DNA Motifs

Description

Genomic biology is not limited to the confines of the canonical B-forming DNA duplex, but includes over ten different types of other secondary structures that are collectively termed non-B DNA structures. Of these non-B DNA structures, the G-quadruplexes are highly stable four-stranded structures that are recognized by distinct subsets of nuclear factors. This package provide functions for predicting intramolecular G quadruplexes. In addition, functions for predicting other intramolecular nonB DNA structures are included.

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Version

Install

install.packages('gquad')

Monthly Downloads

181

Version

2.1-2

License

Artistic-2.0

Maintainer

Hannah Ajoge

Last Published

November 29th, 2022

Functions in gquad (2.1-2)

str

Predicting short tandem repeats
zdna

Predicting Z-DNA motif(s)
gquad

Predicting G quadruplexes
tfo

Predicting triplex forming oligonucleotide(s)
hdna

Predicting intramolecular triplexes (H-DNA)
hdnaO

Predicting intramolecular triplexes (H-DNA) including overlaps
slipped

Predicting slipped motif(s)
gquadO

Predicting G quadruplexes including overlaps
aphased

Predicting A-phased DNA repeat(s)