structure2vector

kinetics2vector

The structure is supposed to be a list. Flattening is done by extracting the given fields (<code>return.fields</code>)
and applying the additional function (<code>return.extra</code>). This is mainly to be used within <code>sapply</code> and similar.

Nucleotide conversion sequencing experiments have been
developed to add a temporal dimension to RNA-seq and single-cell RNA-seq. Such
experiments require specialized tools for primary processing such as GRAND-SLAM,
(see 'Jürges et al' <doi:10.1093/bioinformatics/bty256>) and specialized tools for
downstream analyses. 'grandR' provides a comprehensive toolbox for quality control,
kinetic modeling, differential gene expression analysis and visualization of such data.

Florian Erhard

grandR

Comprehensive Analysis of Nucleotide Conversion Sequencing Data

Teresa Rummel

Lygeri Sakellaridi

Kevin Berg

structure2vector function

<dl><dt>d</dt>
<dd>the data structure</dd>
<dt>return.fields</dt>
<dd>which fields should be extracted directly (may be NULL)</dd>
<dt>return.extra</dt>
<dd>apply a function returning a flat list or vector (may be NULL)</dd>
<dt>condition</dt>
<dd>if the original grandR object had <code>Condition</code> set, which condition to extract (NULL otherwise)</dd></dl>

Arguments

<ul>
<li><code>kinetics2vector()</code>: Convert the output of the FitKinetics methods into a vector</li>
</ul>

Functions

Convert a structure into a vector — structure2vector

<dl>

<dt>d</dt>
<dd>the data structure</dd>


<dt>return.fields</dt>
<dd>which fields should be extracted directly (may be NULL)</dd>


<dt>return.extra</dt>
<dd>apply a function returning a flat list or vector (may be NULL)</dd>


<dt>condition</dt>
<dd>if the original grandR object had <code>Condition</code> set, which condition to extract (NULL otherwise)</dd>

</dl>

structure2vector: Convert a structure into a vector

Description

Usage

Value

Arguments

Functions

Examples