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graph (version 1.44.1)
graph: A package to handle graph data structures
Description
A package that implements some simple graph handling capabilities.
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1.50.0
1.48.0
1.46.0
1.44.1
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Monthly Downloads
134
Version
1.44.1
License
Artistic-2.0
Maintainer
Bioconductor Package Maintainer
Last Published
January 1st, 1970
Functions in graph (1.44.1)
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adjacencyMatrix
Compute an Adjacency Matrix for a graphBAM object
calcProb
Calculate the hypergeometric probability of the subgraph's number of edges.
calcSumProb
Calculate the probability that a subgraph has an unusual number of edges.
edgeData-methods
Get and set attributes for the edges of a graph object
edgeDataDefaults-methods
Get and set default attributes for the edges of a graph
graph-defunct
Defunct Functions in Package
graph
apoptosisGraph
KEGG apoptosis pathway graph
DFS
Depth First Search
integrinMediatedCellAdhesion
KEGG Integrin Mediated Cell Adhesion graph
inEdges
Generic Method inEdges
removeNode
removeNode
MAPKsig
A graph encoding parts of the MAPK signaling pathway
listEdges
List the Edges of a Graph
edgeWeights
Retrieve the edge weights of a graph
renderInfo-class
Class "renderInfo"
fromGXL-methods
Methods for GXL manipulations in package graph
graphNEL-class
Class "graphNEL"
graphExamples
A List Of Example Graphs
MultiGraph-class
Class "multiGraph"
ugraph
Underlying Graph
subGraph
Create a Subgraph
toDotR-methods
Methods for Function toDotR, using R to generate a dot serialization
validGraph
Test whether graph object is valid
attrData-class
Class "attrData"
attrDataItem-methods
Get and set attributes values for items in an attrData object
clearNode
clearNode
clusterGraph-class
Class "clusterGraph"
graph2SparseM
Coercion methods between graphs and sparse matrices
graph-class
Class "graph"
numNoEdges
Calculate the number of nodes that have an edge list of NULL
pancrCaIni
A graph encoding parts of the pancreatic cancer initiation pathway
randomEGraph
Random Edge Graph
randomGraph
Random Graph
addEdge
addEdge
acc-methods
Methods for Accessibility Lists
edgeSets
MultiGraph edgeSet data
edgeMatrix
Compute an Edge Matrix or weight vector for a Graph
internal
Variables used for internal purposes
isAdjacent-methods
Determine if nodes share an edge in a graph
nodeData-methods
Get and set attributes for the nodes of a graph object
reverseEdgeDirections
Reverse the edges of a directed graph
nodeDataDefaults-methods
Get and set default attributes for the nodes of a graph
graph.par
Graphical parameters and other settings
write.tlp
Write a graph object in a file in the Tulip format
attrDefaults-methods
Get and set the default attributes of an attrData object
aveNumEdges
Calculate the average number of edges in a graph
biocRepos
A graph representing the Bioconductor package repository
boundary
Returns the Boundary between a Graph and a SubGraph
graphAM-class
Class "graphAM"
graphBAM-class
EXPERIMENTAL class "graphBAM"
Coercions between matrix and graph representations
Coercions between matrix and graph representations
randomNodeGraph
Generate Random Graph with Specified Degree Distribution
mostEdges
Find the node in a graph with the greatest number of edges
removeEdge
removeEdge
addNode
addNode
adj-methods
Methods for finding the adjacency list for selected nodes.
clusteringCoefficient-methods
Clustering coefficient of a graph
combineNodes
combineNodes
distGraph-class
Class "distGraph"
duplicatedEdges
duplicatedEdges
isDirected-methods
Determine if a graph has directed or undirected edges
leaves
Find the leaves of a graph
Standard labeling of edges with integers
Standard labeling of edges with integers
simpleEdge-class
Class "simpleEdge".