cytoscapePlot

Plot a pathway graph in Cytoscape

Renders the topology of a pathway as a Cytoscape graph.

Usage
cytoscapePlot(pathway, ..., cy.ver=3)
Arguments
pathway
a Pathway object.
...
optional arguments forwarded to pathwayGraph.
cy.ver
select a Cytoscape version. It can be 3 (the default) or 2.
Details

Requires the RCytoscape package.

See Also

Pathway

pathwayGraph

Aliases
  • cytoscapePlot
Examples
r <- pathways()
  cytoscapePlot(convertIdentifiers(reactome$`Unwinding of DNA`, "symbol"))
Documentation reproduced from package graph, version 1.50.0, License: Artistic-2.0

Community examples

Looks like there are no examples yet.