get_graphab

The function checks for the presence of Graphab (.jar) on the
user's machine and downloads it if absent. It also checks that users have
installed java on their machine.

Build graphs for landscape genetics analysis. This set of
functions can be used to import and convert spatial and genetic data
initially in different formats, import landscape graphs created with
'GRAPHAB' software (Foltete et al., 2012) <doi:10.1016/j.envsoft.2012.07.002>,
make diagnosis plots of isolation by distance relationships in order to
choose how to build genetic graphs, create graphs with a large range of
pruning methods, weight their links with several genetic distances, plot
and analyse graphs,	compare them with other graphs. It uses functions from
other packages such as 'adegenet'
(Jombart, 2008) <doi:10.1093/bioinformatics/btn129> and 'igraph' (Csardi
et Nepusz, 2006) <https://igraph.org/>. It also implements methods
commonly used in landscape genetics to create graphs, described by Dyer et
Nason (2004) <doi:10.1111/j.1365-294X.2004.02177.x> and Greenbaum et
Fefferman (2017) <doi:10.1111/mec.14059>, and to analyse distance data
(van Strien et al., 2015) <doi:10.1038/hdy.2014.62>.

Paul Savary

graph4lg

Build Graphs for Landscape Genetics Analysis

Gilles Vuidel

Tyler Rudolph

Alexandrine Daniel

get_graphab function

<dl><dt>res</dt>
<dd>Logical indicating whether a message says if Graphab has been
downloaded or not.</dd>
<dt>return</dt>
<dd>Logical indicating whether the function returns a 1 or a 0
to indicate if Graphab has been downloaded or not.</dd></dl>

Arguments

Author

Download Graphab if not present on the user's machine — get_graphab

<dl>

<dt>res</dt>
<dd>Logical indicating whether a message says if Graphab has been
downloaded or not.</dd>


<dt>return</dt>
<dd>Logical indicating whether the function returns a 1 or a 0
to indicate if Graphab has been downloaded or not.</dd>

</dl>

get_graphab: Download Graphab if not present on the user's machine

Description

Usage

Value

Arguments

Author

Details

Examples