pts_pop_ex

Simulation dataset
10 populations located on a simulated landscape

datasets

Build graphs for landscape genetics analysis. This set of
functions can be used to import and convert spatial and genetic data
initially in different formats, import landscape graphs created with
'GRAPHAB' software (Foltete et al., 2012) <doi:10.1016/j.envsoft.2012.07.002>,
make diagnosis plots of isolation by distance relationships in order to
choose how to build genetic graphs, create graphs with a large range of
pruning methods, weight their links with several genetic distances, plot
and analyse graphs,	compare them with other graphs. It uses functions from
other packages such as 'adegenet'
(Jombart, 2008) <doi:10.1093/bioinformatics/btn129> and 'igraph' (Csardi
et Nepusz, 2006) <https://igraph.org/>. It also implements methods
commonly used in landscape genetics to create graphs, described by Dyer et
Nason (2004) <doi:10.1111/j.1365-294X.2004.02177.x> and Greenbaum et
Fefferman (2017) <doi:10.1111/mec.14059>, and to analyse distance data
(van Strien et al., 2015) <doi:10.1038/hdy.2014.62>.

Paul Savary

graph4lg

Build Graphs for Landscape Genetics Analysis

Gilles Vuidel

Tyler Rudolph

Alexandrine Daniel

pts_pop_ex function

An object of class 'data.frame' with the following columns :<dl>
<dt>ID</dt>
<dd>Population ID of the 10 populations</dd><dt>x</dt>
<dd>Site longitude (RGF93)</dd><dt>y</dt>
<dd>Site latitude (RGF93)</dd>
</dl>

Format

pts_pop_ex : details on simulated populations — pts_pop_ex

An object of class 'data.frame' with the following columns :<dl>
<dt>ID</dt>
<dd>Population ID of the 10 populations</dd>

<dt>x</dt>
<dd>Site longitude (RGF93)</dd>

<dt>y</dt>
<dd>Site latitude (RGF93)</dd>


</dl>

pts_pop_ex: pts_pop_ex : details on simulated populations

Description

Usage

Arguments

Format

References

Examples