graphite (version 1.18.0)

cytoscapePlot: Plot a pathway graph in Cytoscape

Description

Renders the topology of a pathway as a Cytoscape graph.

Usage

cytoscapePlot(pathway, ..., cy.ver=3)

Arguments

pathway

a Pathway object.

...

optional arguments forwarded to pathwayGraph.

cy.ver

select a Cytoscape version. It can be 3 (the default) or 2.

Details

Requires the RCytoscape package.

See Also

Pathway

pathwayGraph

Examples

## Not run: 
#   r <- pathways()
#   cytoscapePlot(convertIdentifiers(reactome$`Unwinding of DNA`, "symbol"))
# ## End(Not run)