graphite (version 1.18.0)

pathwayGraph: Graph representing the topology of a pathway

Description

Builds a graphNEL object representing the topology of a pathway.

Usage

pathwayGraph(pathway, edge.types=NULL)

Arguments

pathway

a Pathway object.

edge.types

keep only the edges maching the type names in this vector.

Value

A graphNEL object.

See Also

Pathway

graphNEL

Examples

  r <- pathways("hsapiens", "reactome")
  pathwayGraph(r$`mTOR signalling`, edge.types="Binding")