grip (version 0.2.0)

build.weighted.misf: Build a weighted MISF hierarchy

Description

build.weighted.misf() builds the weighted max-independent-set filtration used by the weighted GRIP layout core. It is primarily a diagnostic and benchmarking helper for comparing weighted and combinatorial hierarchies on the same graph.

Usage

build.weighted.misf(
  edges = NULL,
  n = NULL,
  adj_list = NULL,
  weight_list = NULL,
  edge_weights = NULL,
  num_init = 24,
  num_nbrs = 20,
  length_normalization = c("median", "mean", "none"),
  seed = 6
)

Value

A list with weighted MISF levels, vertex_depth,

mish_order, misf_size, num_nbrs_schedule,

misf_height, top_level_size, weight_scale, and

length_normalization.

Arguments

edges

Two-column integer matrix of edges (1-based vertex ids).

n

Number of vertices.

adj_list

Adjacency list (1-based) for undirected graphs.

weight_list

Parallel list of strictly positive edge lengths.

edge_weights

Optional vector of edge lengths for edges.

num_init

Number of initial vertices in the coarsest level.

num_nbrs

Maximum number of retained local neighbors per level.

length_normalization

Global edge-length normalization: "median" (default), "mean", or "none".

seed

Optional RNG seed for reproducibility. If NULL, uses current time.

Examples

cycle_edges <- edges.cycle(6)
cycle_lengths <- seq(0.8, 1.3, length.out = nrow(cycle_edges))
levels <- build.weighted.misf(
  edges = cycle_edges, n = 6, edge_weights = cycle_lengths,
  num_init = 3, num_nbrs = 2, seed = 1
)