Ki67

Ki67 cell data containing 622 patients.

internal

An S3 class 'groupedHyperframe' that inherits from hyper data frame. Batch processes and aggregation of hyper column(s) over a nested grouping structure.

Tingting Zhan

groupedHyperframe

Grouped Hyper Data Frame

Ki67 function

<dl>
<dt><code>patientID</code></dt>
<dd><a href="/link/factor?package=groupedHyperframe&version=0.3.4" data-mini-rdoc="groupedHyperframe::factor">factor</a>, unique patient identifier</dd><dt><code>tissueID</code></dt>
<dd><a href="/link/factor?package=groupedHyperframe&version=0.3.4" data-mini-rdoc="groupedHyperframe::factor">factor</a>, TMA core identifier</dd><dt><code>recurrence</code></dt>
<dd><a href="/link/integer?package=groupedHyperframe&version=0.3.4" data-mini-rdoc="groupedHyperframe::integer">integer</a>, recurrence indicator, 1 = Recurred, 0 = not Recurred</dd><dt><code>recfreesurv_mon</code></dt>
<dd><a href="/link/integer?package=groupedHyperframe&version=0.3.4" data-mini-rdoc="groupedHyperframe::integer">integer</a>, recurrence-free survival time in months</dd><dt><code>logKi67</code></dt>
<dd><a href="/link/double?package=groupedHyperframe&version=0.3.4" data-mini-rdoc="groupedHyperframe::double">double</a>, log-transformed cell signal intensity of the protein immunofloerscence signal</dd><dt><code>age</code></dt>
<dd><a href="/link/integer?package=groupedHyperframe&version=0.3.4" data-mini-rdoc="groupedHyperframe::integer">integer</a>, age at diagnosis</dd><dt><code>Tstage</code></dt>
<dd><a href="/link/integer?package=groupedHyperframe&version=0.3.4" data-mini-rdoc="groupedHyperframe::integer">integer</a>, tumor stage</dd><dt><code>node</code></dt>
<dd><a href="/link/factor?package=groupedHyperframe&version=0.3.4" data-mini-rdoc="groupedHyperframe::factor">factor</a>, node stage</dd><dt><code>HR</code></dt>
<dd><a href="/link/logical?package=groupedHyperframe&version=0.3.4" data-mini-rdoc="groupedHyperframe::logical">logical</a>, hormone positive status</dd><dt><code>histology</code></dt>
<dd><a href="/link/integer?package=groupedHyperframe&version=0.3.4" data-mini-rdoc="groupedHyperframe::integer">integer</a>, histology grade</dd><dt><code>Her2</code></dt>
<dd><a href="/link/logical?package=groupedHyperframe&version=0.3.4" data-mini-rdoc="groupedHyperframe::logical">logical</a>, Her2 status</dd><dt><code>race</code></dt>
<dd><a href="/link/character?package=groupedHyperframe&version=0.3.4" data-mini-rdoc="groupedHyperframe::character">character</a>, race, White, Black, Asian, Native Hawaiian or Other Pacific Islander, American Indian or Alaska Native, Unknown</dd><dt><code>adj_chemo</code></dt>
<dd><a href="/link/logical?package=groupedHyperframe&version=0.3.4" data-mini-rdoc="groupedHyperframe::logical">logical</a>, whether completed adjuvant chemo treatment</dd><dt><code>adj_rad</code></dt>
<dd><a href="/link/integer?package=groupedHyperframe&version=0.3.4" data-mini-rdoc="groupedHyperframe::integer">integer</a>, adjuvant radiation treatment, 0 = unknown, 1 = done, 2 = NOT done</dd>
</dl>

Format

Ki67 Data — Ki67

<dl>
<dt><code>patientID</code></dt>
<dd><a href='https://rdrr.io/r/base/factor.html'>factor</a>, unique patient identifier</dd>

<dt><code>tissueID</code></dt>
<dd><a href='https://rdrr.io/r/base/factor.html'>factor</a>, TMA core identifier</dd>

<dt><code>recurrence</code></dt>
<dd><a href='https://rdrr.io/r/base/integer.html'>integer</a>, recurrence indicator, 1 = Recurred, 0 = not Recurred</dd>

<dt><code>recfreesurv_mon</code></dt>
<dd><a href='https://rdrr.io/r/base/integer.html'>integer</a>, recurrence-free survival time in months</dd>

<dt><code>logKi67</code></dt>
<dd><a href='https://rdrr.io/r/base/double.html'>double</a>, log-transformed cell signal intensity of the protein immunofloerscence signal</dd>

<dt><code>age</code></dt>
<dd><a href='https://rdrr.io/r/base/integer.html'>integer</a>, age at diagnosis</dd>

<dt><code>Tstage</code></dt>
<dd><a href='https://rdrr.io/r/base/integer.html'>integer</a>, tumor stage</dd>

<dt><code>node</code></dt>
<dd><a href='https://rdrr.io/r/base/factor.html'>factor</a>, node stage</dd>

<dt><code>HR</code></dt>
<dd><a href='https://rdrr.io/r/base/logical.html'>logical</a>, hormone positive status</dd>

<dt><code>histology</code></dt>
<dd><a href='https://rdrr.io/r/base/integer.html'>integer</a>, histology grade</dd>

<dt><code>Her2</code></dt>
<dd><a href='https://rdrr.io/r/base/logical.html'>logical</a>, Her2 status</dd>

<dt><code>race</code></dt>
<dd><a href='https://rdrr.io/r/base/character.html'>character</a>, race, White, Black, Asian, Native Hawaiian or Other Pacific Islander, American Indian or Alaska Native, Unknown</dd>

<dt><code>adj_chemo</code></dt>
<dd><a href='https://rdrr.io/r/base/logical.html'>logical</a>, whether completed adjuvant chemo treatment</dd>

<dt><code>adj_rad</code></dt>
<dd><a href='https://rdrr.io/r/base/integer.html'>integer</a>, adjuvant radiation treatment, 0 = unknown, 1 = done, 2 = NOT done</dd>


</dl>

Ki67: Ki67 Data

Description

Usage

Arguments

Format

Details